PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782637.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 185aa    MW: 21063.9 Da    PI: 9.8256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.35.5e-12148170123
                     ---SS-EEEEEEE--TT-SS-EE CS
            WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                     ldDgy+WrKYGqK+vk++++prs
  XP_009782637.1 148 LDDGYKWRKYGQKVVKNTQHPRS 170
                     59********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-13133170IPR003657WRKY domain
SuperFamilySSF1182904.05E-10141170IPR003657WRKY domain
PROSITE profilePS5081113.299143185IPR003657WRKY domain
SMARTSM007741.5E-4148184IPR003657WRKY domain
PfamPF031061.4E-8149172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MFSQSLFEDQ ADMSSQQYGF FTFPPNNNNT TLPFGICNQN TLKTLTIIPP SFAADNNSLI  60
ESTALRQKED LTTSIFGGPH LLSLQKATAN TWAWGEVNER SNVKKSRDNI IDDHLGVSAI  120
KMKKMKSSRR KVREPRFCFK TLSDVDVLDD GYKWRKYGQK VVKNTQHPRS LLCYTTVSFY  180
PHATT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754434e-69HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782637.11e-138PREDICTED: probable WRKY transcription factor 48 isoform X2
TrEMBLA0A1U7WRT01e-137A0A1U7WRT0_NICSY; probable WRKY transcription factor 48 isoform X2
STRINGXP_009782635.11e-124(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-22WRKY DNA-binding protein 13