PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783239.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 190aa MW: 20621.2 Da PI: 5.7817

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.4	1.4e-20	2	95	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++ +++a+pe++r+ A+ r+ +Pv Gavg++++++++++q+++ XP_009783239.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRP---------ACGRTVNPVTGAVGLLSTGNWHVCQKAV 89 6***********************99**************************98.........89************************ PP DUF260 93 elallk 98 e++l++ XP_009783239.1 90 ETVLVG 95 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.42	1	98	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-17	2	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR 60 PACGRTVNPV TGAVGLLSTG NWHVCQKAVE TVLVGGNLRP VFAGTLTPTA YMDETFESFR 120 CGGAWDIPNQ FSNKSGSFID GSDHTDTTDW VGLEKRWNTM SSIGSETELS DVSLGLDSGN 180 KEPKLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783239.1	1e-139	PREDICTED: LOB domain-containing protein 38-like isoform X2
Swissprot	Q9SN23	7e-46	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1U7X8I2	1e-137	A0A1U7X8I2_NICSY; LOB domain-containing protein 38-like isoform X2
STRING	XP_009783238.1	1e-135	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-48	LOB domain-containing protein 38