PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783240.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 170aa MW: 18459.8 Da PI: 4.9402

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	34.1	7.5e-11	29	75	52	98
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 + +++++sl++eA+ r+ +Pv Gavg++++++++++q+++e++l++ XP_009783240.1 29 PRAQALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVCQKAVETVLVG 75 556899***********************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.2E-7	25	72	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQALFKSLLF EACGRTVNPV TGAVGLLSTG 60 NWHVCQKAVE TVLVGGNLRP VFAGTLTPTA YMDETFESFR CGGAWDIPNQ FSNKSGSFID 120 GSDHTDTTDW VGLEKRWNTM SSIGSETELS DVSLGLDSGN KEPKLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783240.1	1e-123	PREDICTED: LOB domain-containing protein 38-like isoform X3
Refseq	XP_016440615.1	1e-123	PREDICTED: LOB domain-containing protein 38-like isoform X2
Swissprot	Q9SN23	1e-32	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1S3XKV0	1e-122	A0A1S3XKV0_TOBAC; LOB domain-containing protein 38-like isoform X2
TrEMBL	A0A1U7X9W0	1e-122	A0A1U7X9W0_NICSY; LOB domain-containing protein 38-like isoform X3
STRING	XP_009783238.1	1e-116	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	6e-35	LOB domain-containing protein 38