PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783353.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 213aa    MW: 24466.1 Da    PI: 8.1339
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-3721136289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssa 82 
                     +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++            s ss ++   e++++++++
  XP_009783353.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpridaadgS-SSGNNIvlEQQQQQNQQ 114
                     79**************************************************************9999988877633.33333334444444444 PP

             TCP  83 snsssg...............k 89 
                     ++ + +               +
  XP_009783353.1 115 QEFQLQrqleennpsgwilphH 136
                     4222223444444444444430 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3321124IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPR IDAADGSSSG NNIVLEQQQQ QNQQQEFQLQ  120
RQLEENNPSG WILPHHQQTL YSQQPQGAVF PQREPLQSNF SQLIHAWEER PPMNHVHHQA  180
EISNRHFISD FQIPARIHGE HEEPSSASPN SHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-222881154Putative transcription factor PCF6
5zkt_B3e-222881154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783353.11e-157PREDICTED: transcription factor TCP4-like isoform X2
TrEMBLA0A1U7WXM01e-156A0A1U7WXM0_NICSY; transcription factor TCP4-like isoform X2
STRINGXP_009783352.15e-69(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-48TCP family protein