PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783397.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 175aa MW: 20043.7 Da PI: 9.6405

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.8	1.8e-20	89	139	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr++k +g+WvAe+rd k+ r++lg+f+taeeAa a+++a +++g XP_009783397.1 89 KKYKGVRQRK-WGKWVAEVRDtR----KKNRIWLGTFDTAEEAALAYDKAVIEMRG 139 59*****9.***99933....359*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.72E-30	89	145	No hit	No description
Pfam	PF00847	2.5E-15	90	139	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.549	90	147	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.27E-21	90	146	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.1E-29	90	145	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-34	90	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	91	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	113	129	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MASKEEHQQN EAIEKPSKST NQVGESSAIL PPLVRMHDTP NEEEEKTEGE KSERHEKTRE 60 KAIIIENEKT EVISKEKTKE KKLMQGNAKK YKGVRQRKWG KWVAEVRDTR KKNRIWLGTF 120 DTAEEAALAY DKAVIEMRGV DAMTNILKPP PREPPPKEIN FINPPPSSSK DDARV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-19	90	146	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783397.1	1e-124	PREDICTED: ethylene-responsive transcription factor ERF069-like
TrEMBL	A0A1U7WU03	1e-123	A0A1U7WU03_NICSY; ethylene-responsive transcription factor ERF069-like
STRING	XP_009783397.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	3e-26	cytokinin response factor 4