PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783465.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 166aa MW: 18269.7 Da PI: 7.8022

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783465.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.1	2e-45	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_009783465.1 11 PCAGCKLLRRRCGEDCVFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLRTQLA 105 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_009783465.1 106 MAQAE 110 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.672	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-45	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MKDCGKNSNS PCAGCKLLRR RCGEDCVFAP YFPADEPHKF ANVHKVFGAS NVSKMLQELP 60 EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMAQAE VVHLRLRQSA 120 GITNSPTNSG SPSSHIMGSH QPKGYFHMDL DVDQSNNGFN DPMWPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	7	125	7	125	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	7	125	7	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783465.1	1e-124	PREDICTED: LOB domain-containing protein 4-like
Refseq	XP_016501014.1	1e-124	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	7e-63	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S4CJ26	1e-122	A0A1S4CJ26_TOBAC; LOB domain-containing protein 4-like
TrEMBL	A0A1U7XAI8	1e-122	A0A1U7XAI8_NICSY; LOB domain-containing protein 4-like
STRING	XP_009783465.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-64	LOB domain-containing protein 4