PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783544.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 242aa    MW: 25940.3 Da    PI: 9.586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-202878256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae+Aa+a++aa+++++g+
  XP_009783544.1 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAARAYDAAAREFRGA 78
                    6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1442885IPR001471AP2/ERF domain
SMARTSM003802.9E-392891IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-222886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-332886IPR001471AP2/ERF domain
CDDcd000188.00E-202887No hitNo description
PfamPF008471.3E-132877IPR001471AP2/ERF domain
PRINTSPR003672.9E-112940IPR001471AP2/ERF domain
PRINTSPR003672.9E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPKEKGTAA MATVTAMGKV NGVSKEVHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEDAARAYDA AAREFRGAKA KTNFPVLELE NVKLANGNRS PSQSSTVENS PPVMPENSPP  120
AVMLDASPLD LSLGGSSSLF SNGVGRFLFQ NHLFHGSPVA GGIAGGVTPV NHMYYLEALQ  180
RERMISSYQK SCRKTAEFVA GVGGGTSGES DSSSVIDFMG HDLKPTTRPI NLDLNLPPPE  240
NM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-222486164ATERF1
3gcc_A2e-222486164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737180.0AB573718.1 Nicotiana tabacum NtERF6a gene for ethylene response factor 6a, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783544.11e-180PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A1U7X9E21e-178A0A1U7X9E2_NICSY; ethylene-responsive transcription factor 4-like
STRINGXP_009783544.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.16e-33ethylene responsive element binding factor 4