PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783615.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 137aa MW: 14221.3 Da PI: 8.2791

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	47.9	2.1e-15	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV XP_009783615.1 8 CGGCRTLLMHPRGATSVRCACCHTV 32 ************************9 PP
2	zf-LSD1	43.3	6e-14	46	69	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ XP_009783615.1 46 CGNCRTMLMYPCGAPSVKCAICHY 69 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-17	5	35	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-13	8	32	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.4E-14	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.6E-13	46	70	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MEMAQLICGG CRTLLMHPRG ATSVRCACCH TVNLVPGPNQ FAHVNCGNCR TMLMYPCGAP 60 SVKCAICHYI THVNAGDGRV HVPVHTPNGG ATSSAGPTSS TATARSQNQT VVVQNPMSLD 120 ESGKLVSNVV VGVTTTT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	4e-37	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783614.1	1e-95	PREDICTED: protein LSD1-like isoform X2
Refseq	XP_009783615.1	1e-95	PREDICTED: protein LSD1-like isoform X2
Swissprot	Q6ASS2	3e-49	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A1U7X9L0	3e-94	A0A1U7X9L0_NICSY; protein LSD1-like isoform X2
STRING	XP_009783613.1	7e-94	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	2e-41	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]