PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783627.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 213aa MW: 25039.3 Da PI: 5.1012

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.1e-19	52	105	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ Fe+++++ +e++ +LA++lgL+ qV vWFqNrR+++k+ XP_009783627.1 52 KRKLSEEQVNLLEQSFEEEHKLETERKDKLASELGLDPHQVAVWFQNRRTRYKN 105 45899***********************************************95 PP
2	HD-ZIP_I/II	113.8	1.1e-36	51	142	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sFeee+kLe+erK +la+eLgl+p+qvavWFqnrR R+k+k+lE++y++Lk+++d+ e++rLe+ev +++e+l+e XP_009783627.1 51 RKRKLSEEQVNLLEQSFEEEHKLETERKDKLASELGLDPHQVAVWFQNRRTRYKNKKLEEEYSKLKTEHDTAIVEKCRLENEVIKMKEQLSE 142 8***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.006	46	106	IPR001356	Homeobox domain
SMART	SM00389	5.8E-18	49	110	IPR001356	Homeobox domain
CDD	cd00086	1.49E-15	51	107	No hit	No description
Pfam	PF00046	5.6E-16	52	105	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-17	52	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-19	53	113	IPR009057	Homeodomain-like
PRINTS	PR00031	3.2E-5	77	86	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	81	104	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.2E-5	86	102	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTHQLDDQMV LISQYYPDIY NQLVSEPGEA KPRRRRKKNK VEGSSSGMMM RKRKLSEEQV 60 NLLEQSFEEE HKLETERKDK LASELGLDPH QVAVWFQNRR TRYKNKKLEE EYSKLKTEHD 120 TAIVEKCRLE NEVIKMKEQL SEAENEIQKL LLERNCDGVS SNSPISTSSF TMDQPPLLGE 180 YGMEGILMDN LFFVAENTYN YHEGLEWVNP IYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	53	RKKNKVEGSSSGMMMRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783627.1	1e-158	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	2e-67	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A1U7WUN7	1e-156	A0A1U7WUN7_NICSY; homeobox-leucine zipper protein ATHB-40-like
STRING	XP_009783627.1	1e-157	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-69	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]