PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783720.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 830aa MW: 94126.4 Da PI: 5.6331

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	5.9e-16	641	685	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_009783720.1 641 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 685 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.866	623	711	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	2.2E-4	626	677	IPR009057	Homeodomain-like
Pfam	PF02042	4.2E-13	642	685	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-17	743	828	No hit	No description
SMART	SM00666	7.1E-16	746	829	IPR000270	PB1 domain
PROSITE profile	PS51745	19.571	746	830	IPR000270	PB1 domain
Pfam	PF00564	8.1E-15	746	828	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.9E-15	747	827	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MWPTQRTIKR NDGINRWVFW TQHNGDELNQ VKSLFPILRD STQPDTNGDC QLNRLTIKNL 60 VELLDVQGTC LIQFWSPIRN NGGKTFLTTA DQPFSFNGKI HEGLWAYRRV SLHTIASVDA 120 TEIDETKRIC VHGRPARVFR SGMPEFSPHV RYYYMDEYPL RNFAMCLGVG SYWTLPVFES 180 SGDRCIGVLE YAFEANVGLD LYSILDRLIN NHRILKTMGL ALIPSWLACP QEIQEVWEQE 240 LAQVKEALDV TCKTHMLLFA QTWIPVLDSS RTQMLITSPP TKYWSEEISS LEFLAVSDLH 300 HVQIGQGLVG KVLSSKGSCF CRDITQLSID FYPLVPIARC AGFTACFAIF VRLNSACHMV 360 LEFFLPRDEM LDRNPQSFLS KLLATIREQL PSFFLDSGPS LFVEVIRTAP VDELDSFEIN 420 QPQQVVRSKG NEKVVHFDSL NQDTADLGPS SSTDIGAHYM EITNHTPDNG EETVLQDSAH 480 KQGVEEADAM DKEKSSVHFK ENKFAYTDSD ILATSFVDSE QNLSTDKASL DEKLDSFKIG 540 HRQLPSMVQY NTINQIFGFD PSSSSDLEEI VTADYGRDTQ MNLQSKKRGE STQPDSAHQQ 600 TVEEADVADK RKHSVHVEEN TNSQNCPEKH KRIKRIEKEY GISRSVLEEQ FGKKLSDAAK 660 SLGVARSTLK RMCRDYDIYR WPRSKSANDV CSLSENKPVK RVEKQMGNSS REDLQLPHAS 720 LSNGMDTTTT LTQRKVPIAT FQSDNTMSVK VTYKDVTIRF PLSLSSGKID LETEVEKRLK 780 LVPVGSYSIK YEDEDNDWIA ITCDSDLEYG IHTLRSLGRT TMKMLVEPLN

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MWPTQRTIKR NDGINRWVFW TQHNGDELNQ VKSLFPILRD STQPDTNGDC QLNRLTIKNL  60
VELLDVQGTC LIQFWSPIRN NGGKTFLTTA DQPFSFNGKI HEGLWAYRRV SLHTIASVDA  120
TEIDETKRIC VHGRPARVFR SGMPEFSPHV RYYYMDEYPL RNFAMCLGVG SYWTLPVFES  180
SGDRCIGVLE YAFEANVGLD LYSILDRLIN NHRILKTMGL ALIPSWLACP QEIQEVWEQE  240
LAQVKEALDV TCKTHMLLFA QTWIPVLDSS RTQMLITSPP TKYWSEEISS LEFLAVSDLH  300
HVQIGQGLVG KVLSSKGSCF CRDITQLSID FYPLVPIARC AGFTACFAIF VRLNSACHMV  360
LEFFLPRDEM LDRNPQSFLS KLLATIREQL PSFFLDSGPS LFVEVIRTAP VDELDSFEIN  420
QPQQVVRSKG NEKVVHFDSL NQDTADLGPS SSTDIGAHYM EITNHTPDNG EETVLQDSAH  480
KQGVEEADAM DKEKSSVHFK ENKFAYTDSD ILATSFVDSE QNLSTDKASL DEKLDSFKIG  540
HRQLPSMVQY NTINQIFGFD PSSSSDLEEI VTADYGRDTQ MNLQSKKRGE STQPDSAHQQ  600
TVEEADVADK RKHSVHVEEN TNSQNCPEKH KRIKRIEKEY GISRSVLEEQ FGKKLSDAAK  660
SLGVARSTLK RMCRDYDIYR WPRSKSANDV CSLSENKPVK RVEKQMGNSS REDLQLPHAS  720
LSNGMDTTTT LTQRKVPIAT FQSDNTMSVK VTYKDVTIRF PLSLSSGKID LETEVEKRLK  780
LVPVGSYSIK YEDEDNDWIA ITCDSDLEYG IHTLRSLGRT TMKMLVEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783720.1	0.0	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A1U7XB85	0.0	A0A1U7XB85_NICSY; protein NLP7-like isoform X2
STRING	XP_009783719.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-46	Nin-like family protein