PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783722.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 821aa MW: 93078.3 Da PI: 5.7194

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	5.9e-16	632	676	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_009783722.1 632 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 676 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.866	614	702	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	2.2E-4	617	668	IPR009057	Homeodomain-like
Pfam	PF02042	4.2E-13	633	676	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-17	734	819	No hit	No description
SMART	SM00666	7.1E-16	737	820	IPR000270	PB1 domain
PROSITE profile	PS51745	19.571	737	821	IPR000270	PB1 domain
Pfam	PF00564	7.9E-15	737	819	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.9E-15	738	818	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MPIELKFSYR KRNDGINRWV FWTQHNGDEL NQVKSLFPIL RDSTQPDTNG DCQLNRLTIK 60 NLVELLDVQG TCLIQFWSPI RNNGGKTFLT TADQPFSFNG KIHEGLWAYR RVSLHTIASV 120 DATEIDETKR ICVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRNFAMCLG VGSYWTLPVF 180 ESSGDRCIGV LEYAFEANVG LDLYSILDRL INNHRILKTM GLALIPSWLA CPQEIQEVWE 240 QELAQVKEAL DVTCKTHMLL FAQTWIPVLD SSRTQMLITS PPTKYWSEEI SSLEFLAVSD 300 LHHVQIGQGL VGKVLSSKGS CFCRDITQLS IDFYPLVPIA RCAGFTACFA IFVRLNSACH 360 MVLEFFLPRD EMLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT APVDELDSFE 420 INQPQQVVRS KGNEKVVHFD SLNQDTADLG PSSSTDIGAH YMEITNHTPD NGEETVLQDS 480 AHKQGVEEAD AMDKEKSSVH FILATSFVDS EQNLSTDKAS LDEKLDSFKI GHRQLPSMVQ 540 YNTINQIFGF DPSSSSDLEE IVTADYGRDT QMNLQSKKRG ESTQPDSAHQ QTVEEADVAD 600 KRKHSVHVEE NTNSQNCPEK HKRIKRIEKE YGISRSVLEE QFGKKLSDAA KSLGVARSTL 660 KRMCRDYDIY RWPRSKSAND VCSLSENKPV KRVEKQMGNS SREDLQLPHA SLSNGMDTTT 720 TLTQRKVPIA TFQSDNTMSV KVTYKDVTIR FPLSLSSGKI DLETEVEKRL KLVPVGSYSI 780 KYEDEDNDWI AITCDSDLEY GIHTLRSLGR TTMKMLVEPL N

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MPIELKFSYR KRNDGINRWV FWTQHNGDEL NQVKSLFPIL RDSTQPDTNG DCQLNRLTIK  60
NLVELLDVQG TCLIQFWSPI RNNGGKTFLT TADQPFSFNG KIHEGLWAYR RVSLHTIASV  120
DATEIDETKR ICVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRNFAMCLG VGSYWTLPVF  180
ESSGDRCIGV LEYAFEANVG LDLYSILDRL INNHRILKTM GLALIPSWLA CPQEIQEVWE  240
QELAQVKEAL DVTCKTHMLL FAQTWIPVLD SSRTQMLITS PPTKYWSEEI SSLEFLAVSD  300
LHHVQIGQGL VGKVLSSKGS CFCRDITQLS IDFYPLVPIA RCAGFTACFA IFVRLNSACH  360
MVLEFFLPRD EMLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT APVDELDSFE  420
INQPQQVVRS KGNEKVVHFD SLNQDTADLG PSSSTDIGAH YMEITNHTPD NGEETVLQDS  480
AHKQGVEEAD AMDKEKSSVH FILATSFVDS EQNLSTDKAS LDEKLDSFKI GHRQLPSMVQ  540
YNTINQIFGF DPSSSSDLEE IVTADYGRDT QMNLQSKKRG ESTQPDSAHQ QTVEEADVAD  600
KRKHSVHVEE NTNSQNCPEK HKRIKRIEKE YGISRSVLEE QFGKKLSDAA KSLGVARSTL  660
KRMCRDYDIY RWPRSKSAND VCSLSENKPV KRVEKQMGNS SREDLQLPHA SLSNGMDTTT  720
TLTQRKVPIA TFQSDNTMSV KVTYKDVTIR FPLSLSSGKI DLETEVEKRL KLVPVGSYSI  780
KYEDEDNDWI AITCDSDLEY GIHTLRSLGR TTMKMLVEPL N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783722.1	0.0	PREDICTED: protein NLP7-like isoform X4
TrEMBL	A0A1U7WUY0	0.0	A0A1U7WUY0_NICSY; protein NLP7-like isoform X4
STRING	XP_009783719.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-46	Nin-like family protein