PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783878.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29509.7 Da    PI: 5.7704
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69e-184194356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_009783878.1 41 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 94
                    4557899**********************************************9 PP
2HD-ZIP_I/II128.92.1e-4140132193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+yd lk +n++L++++++L++el++
  XP_009783878.1  40 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDVLKFDNDALKAQNKNLHSELQA 132
                     69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-193698IPR009057Homeodomain-like
SMARTSM003895.8E-1739100IPR001356Homeobox domain
PROSITE profilePS5007116.4714096IPR001356Homeobox domain
PfamPF000465.0E-154194IPR001356Homeobox domain
CDDcd000861.72E-154197No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1843103IPR009057Homeodomain-like
PRINTSPR000311.4E-56776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000311.4E-57692IPR000047Helix-turn-helix motif
PfamPF021831.8E-1596134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLMRRSMSFS GVERCDNHQD LRVDDSEMSD DDGSSQLLGE KKRRLNLEQV KALERSFEVA  60
NKLEPERKIQ LARALGLQPR QIAIWFQNRR ARWKTKQLER DYEILKRQYD VLKFDNDALK  120
AQNKNLHSEL QALTLRNRES GGGGAPMINL NKENEGSWSN GSEENNSIDV NIGTTTTTRT  180
SSGDSPFYSN NNKNNVFPES SPIPLAQLFH QSSSRSDLQC HKIDPTVPDD QGFCNMFATP  240
VDDQTNFWPW PEQQQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783878.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X2
TrEMBLA0A1U7WZ450.0A0A1U7WZ45_NICSY; homeobox-leucine zipper protein HAT7-like isoform X2
STRINGXP_009783877.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-55homeobox 3