PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784041.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 258aa MW: 28036.1 Da PI: 6.8088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8.2e-07	165	191	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + XP_009784041.1 165 SHSLAERARREKISERMKILQDLVPGC 191 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.53E-5	159	200	No hit	No description
SuperFamily	SSF47459	3.4E-8	159	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.756	161	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-8	164	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	165	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTGLLEAAAN 60 SVNESTVTEQ SGRSGGGTAA VRQRDMNSED DSSKLVSTSD ANDLQDGSVA KRQKASESKE 120 ENGGSKVEAE SSSRTVNKGT EQSSKPEPPK DYIHVRARRG QATDSHSLAE RARREKISER 180 MKILQDLVPG CNKFLSMKLE AVNSRMSHPV ETFPSKDVSI WFSFSLSQVA GRWVQVYVDL 240 RQTLYLFYLL ILSNFWSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	7e-56	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	7e-56	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784041.1	0.0	PREDICTED: transcription factor bHLH79 isoform X3
Swissprot	Q9LV17	1e-51	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1U7X2Z5	0.0	A0A1U7X2Z5_NICSY; transcription factor bHLH79 isoform X3
STRING	XP_009784039.1	1e-171	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	9e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]