PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784127.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 215aa    MW: 24373.6 Da    PI: 8.6404
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702184.15.6e-57121494154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 
                      +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r++ l++ ++++++++  +a++kr re+               ++  
  XP_009784127.1  12 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQKqLQANPKRYREN--------------DNNLA 92 
                     6789*********************************************999998866655443233444444433..............22223 PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        + ++lP+e+s +avfrcvrvssvd+  +++aYqt+v+i+GhvfkGiLydqG+e+
  XP_009784127.1  93 AGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 149
                     3345678************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.8E-6114148IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.0E-271657IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.1E-25100147IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMMMMREDGI SSNSRCQDCG NQAKKDCPYL RCRTCCKSRG FQCQTHVKST WIPVSRRRPR  60
HHLLHTIQQQ QQQQKQLQAN PKRYRENDNN LAAGGKEEDL PTELSLPAVF RCVRVSSVDN  120
VVDQYAYQTS VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS  180
YPSPFNNFMP APPLVMSSSR GNSLLQECMI IAALG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784127.11e-163PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A1U7WW361e-161A0A1U7WW36_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X2
STRINGXP_009784124.11e-157(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.19e-52SHI-related sequence 5