PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784129.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 191aa MW: 21480.3 Da PI: 8.9541

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	83.8	4.4e-26	6	79	81	154
DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ +s+k+++ s + + ++lP+e+s +avfrcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_009784129.1 6 TNNNSNKSSKIPQVGSGEGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 79 566778888899999999999999************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.6E-23	24	78	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	6.5E-25	30	77	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MRLLVTNNNS NKSSKIPQVG SGEGGKEEDL PTELSLPAVF RCVRVSSVDN VVDQYAYQTS 60 VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS YPSPFNNFMP 120 APPLVMSSSR GNSLLQECMV RLYIYNKSSC PKPHAQREFR APDCLFANKK PWCRSLQHLG 180 KSWQRHEKGN L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784129.1	1e-143	PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X4
TrEMBL	A0A1U7XB24	1e-141	A0A1U7XB24_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X4
STRING	XP_009784124.1	1e-124	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	8e-23	SHI-related sequence 7