PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784220.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 563aa    MW: 62584.3 Da    PI: 6.7674
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27318372156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+g+t+++v+SHLQkYR++
  XP_009784220.1 318 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGITRHNVASHLQKYRMH 372
                     5689*****************.********************************96 PP
2Response_reg31.87.4e-12211271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++ + ++ +r+ lek +y +v ++ +  eal  + +k   +++ ++ +   ++dG+  l+ +++++ +lp i+ +   + +++ +++ +G
  XP_009784220.1  21 VLLLDEDCNSASEMRSRLEKLDY-IVYSFCNENEALSAISNKSedFHVAIVEVTAGNSDGV--LQFLESAK-DLPTIMTSNIHSLSTMMKCIALG 111
                     7899999999*************.***************666556***************5..66676666.9*******9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp + ++l +
  XP_009784220.1 112 AVEFLQKPLSDDKLKN 127
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-1617147No hitNo description
SuperFamilySSF521727.97E-1617136IPR011006CheY-like superfamily
SMARTSM004480.002619129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.02920133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-821127IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.68E-1022132No hitNo description
Gene3DG3DSA:1.10.10.601.3E-26315375IPR009057Homeodomain-like
PROSITE profilePS5129413.363315374IPR017930Myb domain
SuperFamilySSF466898.6E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24318372IPR006447Myb domain, plants
PfamPF002494.4E-7321370IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MICTEDDQLL GWKDFPKGLK VLLLDEDCNS ASEMRSRLEK LDYIVYSFCN ENEALSAISN  60
KSEDFHVAIV EVTAGNSDGV LQFLESAKDL PTIMTSNIHS LSTMMKCIAL GAVEFLQKPL  120
SDDKLKNIWQ HVVRKAFNAG EKDVPESLKP VKESLVSVPQ LQPVKSAAGD KSSNETEPFT  180
TVPGNNNEHS SGCDKYPAPS TPQLKHGVRS VDDGDCQEHT IFSTEQDSGE HDGDAKSVET  240
TFNNTVAEST VQTSPREQQG QTIVKEENGS SPHQKMEADI ATSSPSNNCP DNRTSHSAEP  300
SKASAPHSSS GTKTNKKKMK VDWSPELHKK FVQAVEQLGI DQAIPSRILE LMKVEGITRH  360
NVASHLQKYR MHRRQILPKE VERRWPHPQP RDSVQRGCYP HHTPIMTFPP YHCNHVPAAG  420
QLYPAWVPPA SYPNGLQVWG SPYYPAWQPA DSWHWNPHPG LHADTWGSPV MPPSLGSYPP  480
YPQNGGVYRP NGMQNRYSML EKSFDLHPAE EVIDKVVKEA ITKPWLPLPL GLKRPSTESV  540
LRELSRQGIS TVPPQINGSR GRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-16323372655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784220.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-130APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U7XCN50.0A0A1U7XCN5_NICSY; two-component response regulator-like APRR2 isoform X2
STRINGXP_009784214.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-133ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]