PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784336.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 202aa MW: 22121.3 Da PI: 4.7971

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138	3.2e-43	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++gvi +lq+q++ l+ae a XP_009784336.1 49 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGVICQLQKQISGLQAEFA 143 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_009784336.1 144 KAQAE 148 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.304	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-43	49	146	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MECSDNKTTT ISSLTANIVS ATTTSSELIS PRSIISAPPS PPPPVILTPC AACKILRRRC 60 VDKCVLAPYF PPTDPLKFTI AHRVFGASNI IKMLQELPEE QRADAVNSMV YEANARIRDP 120 VYGCAGVICQ LQKQISGLQA EFAKAQAEIL NLKCQNSNLL ALVCMEVTEY QENSSSSNDY 180 GNNTSLFLED NSVYAAWEPL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-43	40	154	2	116	LOB family transfactor Ramosa2.1
5ly0_B	9e-43	40	154	2	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-62	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784336.1	1e-148	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016458827.1	1e-148	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S3Z3S5	1e-147	A0A1S3Z3S5_TOBAC; LOB domain-containing protein 1-like
TrEMBL	A0A1U7X3R6	1e-147	A0A1U7X3R6_NICSY; LOB domain-containing protein 1-like
STRING	XP_009784336.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-74	LOB domain-containing protein 1