PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784547.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 225aa MW: 25405.4 Da PI: 7.3222

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	131.3	3.2e-41	26	119	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqd +lPianv+rim+++lP++ak+s+dake +qe vsefi +t+ a+++c+re+r+t++++d++wa+ ++G+ +yv pl++yl+k+re e XP_009784547.1 26 REQDLHLPIANVTRIMRRILPQHAKVSDDAKEAIQELVSEFINHITNLANERCHREQRRTVTAEDVIWAMNKIGLTNYVGPLTLYLQKHREQED 119 89*****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-43	21	125	IPR009072	Histone-fold
SuperFamily	SSF47113	5.74E-35	28	125	IPR009072	Histone-fold
Pfam	PF00808	1.2E-22	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.7E-9	59	77	No hit	No description
PRINTS	PR00615	5.7E-9	78	96	No hit	No description
PRINTS	PR00615	5.7E-9	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MERGQHSNQC RITRSSNSEA RQQAKREQDL HLPIANVTRI MRRILPQHAK VSDDAKEAIQ 60 ELVSEFINHI TNLANERCHR EQRRTVTAED VIWAMNKIGL TNYVGPLTLY LQKHREQEDS 120 GQRIRPNTVR PNVELGLARR TGSAQVLPIN YAPGPGYSYP HFPPTGVFYD PAVHVMMNGF 180 NDMINYMRSE EEIGENDGPA ESSSSTATNY GVPAGVNDPY GHLKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-42	26	116	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784547.1	1e-170	PREDICTED: nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A1U7WXA5	1e-168	A0A1U7WXA5_NICSY; nuclear transcription factor Y subunit B-6-like
STRING	XP_009784547.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16246	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-45	nuclear factor Y, subunit B6