PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784656.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 256aa    MW: 27852 Da    PI: 8.0958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+ksF +   L  H  +H
  XP_009784656.1 102 YKCSVCNKSFASYQALGGHKASH 124
                     9***********99998888877 PP
2zf-C2H212.30.00051153175123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F++   L  H r+H
  XP_009784656.1 153 HECSICHKYFPTGQALGGHKRRH 175
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-7101175No hitNo description
SMARTSM003550.005102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011102129IPR007087Zinc finger, C2H2
PfamPF139123.4E-13102125IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM003550.19153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556153180IPR007087Zinc finger, C2H2
PfamPF139122.6E-11153177IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MALEALNSPT KEPTPTTPPI CEQVNLDSST KRKRSKRPHN EIQPTEEEFL ALCLIMLARS  60
GGGRTNSTHH DTTAAVQQQK KQIANDPLPR QDQEALIEQH SYKCSVCNKS FASYQALGGH  120
KASHRNKHST TTATTVSDDN YTSTSLNPSG RSHECSICHK YFPTGQALGG HKRRHYEGKI  180
IGGGGGSREA GGSHTVISSE AGGSARTVRD FDLNLPPPPE FSLGLTVDCE GKSQLSSEQE  240
VESPMPTKKP RLFFLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784656.10.0PREDICTED: zinc finger protein ZAT6-like isoform X2
TrEMBLA0A1U7X4N90.0A0A1U7X4N9_NICSY; zinc finger protein ZAT6-like isoform X2
STRINGXP_009784655.11e-165(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-41salt tolerance zinc finger