PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784713.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 382aa    MW: 43610.7 Da    PI: 6.3298
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.21.2e-2477158286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k++++    + s +++y +++e
  XP_009784713.1  77 WVQEETRALISLRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKHNQEP---NGSAKMSYHKEIE 158
                     ****************************************************************99886...5667888988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-468135IPR009057Homeodomain-like
PROSITE profilePS500908.71169133IPR017877Myb-like domain
SMARTSM007176.8E-673135IPR001005SANT/Myb domain
CDDcd122031.43E-2875140No hitNo description
PfamPF138372.6E-1976160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSDKPPTSIN LYEEQESMDQ HSNHMIIEVA TPNAHLQQPQ QILLPGISGG DTTSSGGEDN  60
NNNNNLKLAP KKRAETWVQE ETRALISLRR ELDSLFNTSK SNKHLWDQIS LKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK HNQEPNGSAK MSYHKEIEEI LKARNKNYKN PTLKVDTFMQ  180
FSQKGLDDTS ITFGPVEENG RPTLNLERQL DHDGHPLAIT AADAVTASGS PWNWRETPGN  240
GEQSNSAEGR VISVKWGDYT KRIGIDGTAD AIKQAIKSAF RLRTERAFWL EDEQNIVRAL  300
DRDMPLGSYT LHVDEGLTIK VCMYEEADHL PVHTEDKTFY TTNDFRDFLS HRGWTCLREY  360
NGYRHVDMLD ELCPGAVYRG IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A8e-4571156186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS469420.0S46942.1 Box II Factor [tobacco, mRNA Partial, 1506 nt].
GenBankTOBB2F0.0M96432.1 Nicotiana tabacum DNA-binding protein (B2F) gene, 3' end.
GenBankTOBGT1A0.0M93436.2 Nicotiana tabacum DNA-binding protein (GT-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784713.10.0PREDICTED: trihelix transcription factor GT-4
SwissprotQ9FX531e-162TGT1_ARATH; Trihelix transcription factor GT-1
SwissprotQ9LU921e-162TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A1U7X1K10.0A0A1U7X1K1_NICSY; trihelix transcription factor GT-4
STRINGXP_009784713.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-162Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]