PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784938.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 403aa MW: 45285.7 Da PI: 6.7154

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	177	222	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +++r+ R ++N+++ Lr+l+P++ +K++ a+i+ A+ YI++L XP_009784938.1 177 KHFAADRQKRVHLNDKYKALRSLVPNP-----TKNDRASIVGDAIMYINEL 222 79***********************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.26E-9	171	226	No hit	No description
SuperFamily	SSF47459	3.93E-13	171	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.783	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	177	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-10	177	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-6	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MQHSYNTNNS NNSAIANSLT QEFVHESSSH QGPSFDQSNW GDISFPQFHH QLEDHHFQAP 60 LHTDMFPLHM TCSFSFTNTT HISSDGIRDL HTADGASTST AIYGPSLFPL NLPPNSPLIR 120 ELVHSTFGSL FNGMDTEVSG DLYQDAGEGK SRFDNGIFEF SADTSCMTKD RENKEIKHFA 180 ADRQKRVHLN DKYKALRSLV PNPTKNDRAS IVGDAIMYIN ELKRTVNELK ILVDKKMCCR 240 DRIKRQKSGP MNSADVKLRN EVDRSSLRSS WLQRKTTNTN EVDRSSLRSS WLQRKTTNTE 300 VDVRIVDDEV TVKLVQPKRI NCLLFVSKVL DDLQLDLHHV AGGLIGDCYS FLFNSKICEG 360 STVYAIAIAN KLIEIVDTEI SPCNTTSTPL QVSTSYSSGP DLY

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MQHSYNTNNS NNSAIANSLT QEFVHESSSH QGPSFDQSNW GDISFPQFHH QLEDHHFQAP  60
LHTDMFPLHM TCSFSFTNTT HISSDGIRDL HTADGASTST AIYGPSLFPL NLPPNSPLIR  120
ELVHSTFGSL FNGMDTEVSG DLYQDAGEGK SRFDNGIFEF SADTSCMTKD RENKEIKHFA  180
ADRQKRVHLN DKYKALRSLV PNPTKNDRAS IVGDAIMYIN ELKRTVNELK ILVDKKMCCR  240
DRIKRQKSGP MNSADVKLRN EVDRSSLRSS WLQRKTTNTN EVDRSSLRSS WLQRKTTNTE  300
VDVRIVDDEV TVKLVQPKRI NCLLFVSKVL DDLQLDLHHV AGGLIGDCYS FLFNSKICEG  360
STVYAIAIAN KLIEIVDTEI SPCNTTSTPL QVSTSYSSGP DLY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784938.1	0.0	PREDICTED: transcription factor bHLH91-like isoform X1
TrEMBL	A0A1U7X276	0.0	A0A1U7X276_NICSY; transcription factor bHLH91-like isoform X1
STRING	XP_009784938.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	2e-63	bHLH family protein