PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009785489.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 251aa MW: 28392 Da PI: 7.0858

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009785489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.6e-18	67	116	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ +++g XP_009785489.1 67 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAAIAIKG 116 69**888.******843...6********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.37E-33	66	126	No hit	No description
Pfam	PF00847	2.0E-12	66	116	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.418	67	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.17E-21	67	125	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.0E-31	67	125	IPR001471	AP2/ERF domain
SMART	SM00380	9.4E-37	67	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-10	68	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-10	90	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEEKSLISNN INNQTTYSTI PHFFPSSSLS KRPTTLASSK QETNYKKTKC NDMNKKTKKI 60 DDLKHPIYHG VRKRSWGKWV SEIREPRKKS RIWLGTFATA EMAARAHDVA AIAIKGPLAL 120 LNFPELVHQF PKPASKCAKD IQAAATKAAA LNICSTNCIT EESQGELMEQ FSSEEIESRA 180 SSSSTSSLSC KNEDPFLDLP DLLLDLSQKF DKFCYYNSPW ELVGAESNDS NHSEFWSEDL 240 YLWDYNYGTV L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	64	124	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785489.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF038-like
Refseq	XP_016492543.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	2e-50	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1S4BUP4	0.0	A0A1S4BUP4_TOBAC; ethylene-responsive transcription factor ERF038-like
TrEMBL	A0A1U7XEW2	0.0	A0A1U7XEW2_NICSY; ethylene-responsive transcription factor ERF038-like
STRING	XP_009785489.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	7e-34	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]