PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785821.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 261aa    MW: 29730.8 Da    PI: 6.4299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.25.8e-22165223259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+++WrKYG K   gs+f +sYYrC    +Cp++++v++s++  + v++tY+g+H h+
  XP_009785821.1 165 ADQWRWRKYGMKRTGGSPFLKSYYRCNEVeNCPARRHVQQSSTAANKVVVTYRGQHIHH 223
                     59************************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-22158225IPR003657WRKY domain
PROSITE profilePS5081122.883159225IPR003657WRKY domain
SuperFamilySSF1182903.4E-19162225IPR003657WRKY domain
SMARTSM007748.8E-22164224IPR003657WRKY domain
PfamPF031061.2E-18166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDENDWDLWA IVRSCYNVNR AIPDDDVRSC NNVNTTALID HCVDQDTSHG NSAANTNTPT  60
FFPEQRDWFG DFSDLFPPEN EHCFGLDEVC CLSKNVNTNS RIEPHNPENK TETIPNTPLV  120
VEHEEKNKKA RGSMQLSRIE EGKAFSYRGK STERYEILTE KLSEADQWRW RKYGMKRTGG  180
SPFLKSYYRC NEVENCPARR HVQQSSTAAN KVVVTYRGQH IHHPPPNQHI AMVHTSQNAN  240
APVQDPSFPS STSASTSLLF N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-131662271676WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785821.10.0PREDICTED: probable WRKY transcription factor 50
RefseqXP_016437028.10.0PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1S3XB950.0A0A1S3XB95_TOBAC; probable WRKY transcription factor 50
TrEMBLA0A1U7X8130.0A0A1U7X813_NICSY; probable WRKY transcription factor 50
STRINGXP_009785821.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-13WRKY DNA-binding protein 15