PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009785905.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 438aa MW: 48800.8 Da PI: 9.9037

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009785905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2.1e-39	53	152	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+Ca+dC+lapyfpae++k+f n+hklFG+sn+lk+lk++p+ ++e+am++l++eA++ra+dPv G+++vi++l++q++ +++l+ XP_009785905.1 53 ACAACKYQRRRCAPDCPLAPYFPAERQKDFLNAHKLFGVSNILKVLKNVPPFQKENAMKALIFEANIRADDPVGGCHRVIQNLHRQINLYQSQLQ 147 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ XP_009785905.1 148 LVYHQ 152 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.265	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-38	53	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MTNVVNNTQN ISSSATTSAV TTSTGVRSNP KNITRVASRG GGSGGSGANG SQACAACKYQ 60 RRRCAPDCPL APYFPAERQK DFLNAHKLFG VSNILKVLKN VPPFQKENAM KALIFEANIR 120 ADDPVGGCHR VIQNLHRQIN LYQSQLQLVY HQIVRVQEAA IREQQNFNTM TSVRGTNRNL 180 NFDMLPLHGL HGFNKSNSIC LGEAGSSSQI VKGKGVERFN NVEEFEVKTM MTHSNSKQPL 240 IESEDIKPYF GSIHNFKGKG VATELSPSLF AIAKAFFAFA RVAITNCGSQ MRHLQFVFSC 300 IQVLISSSCA DHRGRDSRLV LRIHHMMFSM ALCQMEEYDS GIQIAESDLH PFWAGYLHFG 360 IKGSRRDNFR FIGGLFSVGI VVAVEQGASE EMWWFMSFWA TWFVLRSSVF GALFGIIAYR 420 LSKEMGQLRS VGSAWQWK

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MTNVVNNTQN ISSSATTSAV TTSTGVRSNP KNITRVASRG GGSGGSGANG SQACAACKYQ  60
RRRCAPDCPL APYFPAERQK DFLNAHKLFG VSNILKVLKN VPPFQKENAM KALIFEANIR  120
ADDPVGGCHR VIQNLHRQIN LYQSQLQLVY HQIVRVQEAA IREQQNFNTM TSVRGTNRNL  180
NFDMLPLHGL HGFNKSNSIC LGEAGSSSQI VKGKGVERFN NVEEFEVKTM MTHSNSKQPL  240
IESEDIKPYF GSIHNFKGKG VATELSPSLF AIAKAFFAFA RVAITNCGSQ MRHLQFVFSC  300
IQVLISSSCA DHRGRDSRLV LRIHHMMFSM ALCQMEEYDS GIQIAESDLH PFWAGYLHFG  360
IKGSRRDNFR FIGGLFSVGI VVAVEQGASE EMWWFMSFWA TWFVLRSSVF GALFGIIAYR  420
LSKEMGQLRS VGSAWQWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-29	45	155	7	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-29	45	155	7	113	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785905.1	0.0	PREDICTED: uncharacterized protein LOC104234106
TrEMBL	A0A1U7XHF7	0.0	A0A1U7XHF7_NICSY; uncharacterized protein LOC104234106
STRING	XP_009785905.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14294	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-34	LOB domain-containing protein 22