PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009785996.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 175aa MW: 20164.3 Da PI: 9.2401

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009785996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	106.5	4.3e-33	9	112	3	121
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 s +++CqdCGnqakkdC++ RCRtCC+srgf+C+th+kstW p++ rr r++ ++++s+ +++ + + +kr r ++++ XP_009785996.1 9 SSSSRCQDCGNQAKKDCTYLRCRTCCRSRGFHCQTHIKSTWAPVSTRRPRHHLHQQLSTIQQQLQaVPNPNKRYR----------------ENHE 87 56789******************************************97766665433322110122222222................2223 PP DUF702 97 kkeletsslPeevsseavfrcvrvs 121 + e ++P evs +avfrc+r+ XP_009785996.1 88 IQGEEEGDFPGEVSFPAVFRCIRLV 112 34556678*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-35	11	112	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-25	14	55	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MMKEVEGSSS SSRCQDCGNQ AKKDCTYLRC RTCCRSRGFH CQTHIKSTWA PVSTRRPRHH 60 LHQQLSTIQQ QLQAVPNPNK RYRENHEIQG EEEGDFPGEV SFPAVFRCIR LVKAAPFSSS 120 NLLFYLLLQP LVLLQHLLIP ILLVLSFLAT TTWAQIKRIS TCTEFMHLSS FMDKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785996.1	1e-129	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X3
Swissprot	Q9SD40	4e-30	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1U7X8M3	1e-128	A0A1U7X8M3_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X3
STRING	XP_009785993.1	3e-79	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-27	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]