PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009786307.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 254aa MW: 29267.8 Da PI: 7.4232

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009786307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.8e-28	87	141	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+eLHerFv+av++LGG+ +A P++i++ m+v Ltl+h+kSHLQkYR+ XP_009786307.1 87 KPRMKWTEELHERFVNAVAELGGAWEAKPRAIKRKMQVRALTLYHIKSHLQKYRM 141 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.215	84	144	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-15	86	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	87	142	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.1E-25	87	142	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-9	89	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MLPLVPFAMN DNARQYRRIP ILDRHFQEPL NPLPLNNVPA LANQNHQPLI FYGGMNVMNN 60 DHDNHLRFFD GNVPHVEQEV DQPRLVKPRM KWTEELHERF VNAVAELGGA WEAKPRAIKR 120 KMQVRALTLY HIKSHLQKYR MAQEPDDARR KPMKKLSLEE RQQKLLHEVE MKKVATKFQT 180 MLPFEDQAGS SKFVPMLTQF PSIPLAPPPA DVYIPQPPTE AANEHVLPGI EDMVAQSIAE 240 NSVEDFLRAL ELAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786307.1	0.0	PREDICTED: uncharacterized protein LOC104234442 isoform X2
TrEMBL	A0A1U7X2C7	0.0	A0A1U7X2C7_NICSY; uncharacterized protein LOC104234442 isoform X2
STRING	XP_009786306.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	2e-21	G2-like family protein