PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786318.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 563aa    MW: 61807.8 Da    PI: 10.9167
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.5e-151349541
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     +  r+ ++ kR++g++KK  ELS+LCd+e+a ii+s
  XP_009786318.1 13 RDAERKASYKKRKKGLFKKVLELSTLCDVEIAAIIYS 49
                    567899******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.142149IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-22396IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-141149IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-93859IPR002100Transcription factor, MADS-box
PRINTSPR012186.7E-5185196IPR003882Pistil-specific extensin-like protein
PRINTSPR012186.7E-5376399IPR003882Pistil-specific extensin-like protein
PRINTSPR012186.7E-5410428IPR003882Pistil-specific extensin-like protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005199Molecular Functionstructural constituent of cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIIYSA FHRGAEVWPS  60
HEQVMRIIER FRALPEIEQS KRQVNLEGFT RQRIKKLEDQ LRKIRKENRI KEFTNLMYDL  120
LGGQEVPQNM HPYDLNDLTY VIDQNLQKVY ERMAEEAKKN GFTFDVPLTG PTGPPRGTNF  180
EEPRAPLAPP PPVVPPVAPT SMVRPMASIS MVRPMAPSMV RPFAASSYAP PLPVPPPRFV  240
HPMGLXRKKK KKKIYASSYA PPLPVPPPRF VHPMGLPRAL SPVPPPRMFR PVGLSSWPPA  300
PVSQQIFRPM VAQMVSPMPP VVDTRSWATR VASSPMPPTV APRSWAPRVA FPMPPAAAPR  360
SWAPSVASPM PPAAAPRSWA PSVASPMTPA AGPTSWAPSL ASPMPPAAAP RSWAPSVASP  420
MPPAAAPTSW APSLASPMPP AADHRSWAPS VASPMPPAVA PRSWAPGVAS SMPLQMAPAM  480
SPRMDFPMIP VMSSPMVPSV TPPMANSMNS SVDASMPMTN YKNYFYGNPQ SPPDWEEDAL  540
MAFVNGTSSS NIFEEPNQHN NNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLAFIIRDAERKASYKKRK
22125KKRKK
3246252RKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786318.10.0PREDICTED: vegetative cell wall protein gp1-like
TrEMBLA0A1U7X6400.0A0A1U7X640_NICSY; vegetative cell wall protein gp1-like
STRINGXP_009786318.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-35AGAMOUS-like 80