PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787704.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 252aa    MW: 29315.6 Da    PI: 9.846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.5e-161694998
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      +k+g + +p +f+ ++ +g+  ++++  +  + g++W vk+  ++++    l++GW++F+++++L+ gD++vF+++g++ f   v++f 
  XP_009787704.1 16 PGFKHG-IKIPTSFL-KYlKGN--NHIEHAILRRAGKKWLVKV--KGRR----LEDGWEKFAEEHDLQYGDILVFRYEGDMAF--EVSIFH 94
                    556666.9*******.554777..567899999**********..7777....**************************9999..888775 PP
2B354.71.9e-17150235594
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++++ l++++l++pk+fa ++g+++++  +l+++de+ rsW++ l  r +s  +++++GW++  + + LkegD ++F+++ + e++++ 
  XP_009787704.1 150 TVRPYCLSKDILSIPKQFAWANGLINKK-CDLIIRDERQRSWNLIL--RSYSTNVYISGGWNKIRDTHCLKEGDRIMFEVVAN-EKKPTW 235
                     578999****************988654.59***************..*******************************9875.444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-22398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-21498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.576796IPR003340B3 DNA binding domain
CDDcd100174.84E-16893No hitNo description
SMARTSM010191.4E-161096IPR003340B3 DNA binding domain
PfamPF023625.1E-131894IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-18144239IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-16144232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589146243IPR003340B3 DNA binding domain
SMARTSM010191.3E-16147241IPR003340B3 DNA binding domain
PfamPF023621.8E-14149237IPR003340B3 DNA binding domain
CDDcd100172.04E-12154225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKVSPKKPHF FKPILPGFKH GIKIPTSFLK YLKGNNHIEH AILRRAGKKW LVKVKGRRLE  60
DGWEKFAEEH DLQYGDILVF RYEGDMAFEV SIFHSNQCED EQKAHNVEET SKKFEFKGKP  120
NNSIKSSNKE FSHSEAAIHK PFGHSHFVCT VRPYCLSKDI LSIPKQFAWA NGLINKKCDL  180
IIRDERQRSW NLILRSYSTN VYISGGWNKI RDTHCLKEGD RIMFEVVANE KKPTWKFHAK  240
SGEDASIIQE VD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787704.10.0PREDICTED: putative B3 domain-containing protein REM15
TrEMBLA0A1U7XL740.0A0A1U7XL74_NICSY; putative B3 domain-containing protein REM15
STRINGXP_009787704.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-42B3 family protein