PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787785.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20406.1 Da    PI: 9.0753
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.6e-131561147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ienk  r  tfskRr+g+ KKA+ L   Cda++ +++ s+ gk +
  XP_009787785.1 15 KKIENKDDRFATFSKRRTGLYKKASNLVSQCDADIGIVLSSPAGKPF 61
                    68*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-18766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.081767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-21878IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-14929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVSKKTKGRQ KIAIKKIENK DDRFATFSKR RTGLYKKASN LVSQCDADIG IVLSSPAGKP  60
FSFFHPTIDV VIARFQNPDM QLSEINRLVA AYARNKVNYL NSRLEEFDTR EDAATVQTRF  120
YDQMSKTRQS DWWESIEQLN ACEMIMFEAW LDNAMFNLNN HLNQLEIGAS SSSPNYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787785.11e-131PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7XMR71e-130A0A1U7XMR7_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009787785.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27AGAMOUS-like 62