PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787995.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 244aa    MW: 28058.4 Da    PI: 6.5084
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.34.3e-1284161290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+e+A+  GFsv k++ +++   ++    t++C +   r+ + ++          +   Cka+l   ++++g w+v+k++++HnH++ 
  XP_009787995.1  84 FYKEHARLRGFSVIKRNLNQK-GGDTARYITYCCDRTRIRKIKFTT----------KSNYCKARLAAILDDSGCWRVSKVVHDHNHDFL 161
                     9*************9998887.55558999******9999987666..........7778**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-984162IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGKRARNPSK KFQQAVHLDD DGDDEEADGE YHGEANDDEE QVLGNELEFC DVDREMENEF  60
TEEDVVVGSI SGMRFRDKDT LFAFYKEHAR LRGFSVIKRN LNQKGGDTAR YITYCCDRTR  120
IRKIKFTTKS NYCKARLAAI LDDSGCWRVS KVVHDHNHDF LPSVSRLMAG HRFVCDSLKR  180
DLVAYDRSGI RPSKNIRLTE VQRGGPQNLG CTPKDCKNYI LKSGNFEMQE GDTQSLLNFF  240
HEIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787995.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A1U7XND00.0A0A1U7XND0_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009787995.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-13FAR1-related sequence 5