PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788007.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 222aa    MW: 24324 Da    PI: 6.8887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.8e-07187212630
                     HHHHHHHHHHHHHHHHHHHCTSCC.C CS
             HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                     +++Er RR ri +++ +L+el+P+ +
  XP_009788007.1 187 SIAERVRRTRISDRIRKLQELVPNmD 212
                     689********************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.743181222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-6184216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-5186214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQRGSGGAGG VGGGLSRYRS APATWLEALL ESDTENEVVL NPSSPILHSP NKPPPHPSTT  60
QQQLPELVKP ETRFTGDPGL FESGGSSNFL RQQSSPAEFL SHINSDGYFS SYGIPSSLSY  120
ISQPIKRPRE DDSESSPRKL SNHLKGEPSG QLHGSGGSLD AEMEKLMDDL VPCKVRAKRG  180
CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKENDEQDN HL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-50HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-50HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788007.11e-162PREDICTED: transcription factor bHLH80-like isoform X2
TrEMBLA0A1U7X7E21e-161A0A1U7X7E2_NICSY; transcription factor bHLH80-like isoform X2
STRINGXP_009788006.11e-146(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-37bHLH family protein