PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788151.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 418aa MW: 47153.6 Da PI: 6.2294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	227	272	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h E++RR + ++f+ Lr l+P++ K++ a+i A+ YI++L XP_009788151.1 227 KHHTSEKQRRVHFSDKFQALRALIPNP-----SKNDRATIIADAIGYINML 272 68899*******************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-13	221	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.697	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.72E-9	227	276	No hit	No description
Pfam	PF00010	3.6E-7	227	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-13	227	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-6	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MYAESSLSFD PTSQQDEGIE EKGLLQNDHL TTCATNFSMQ QQQQQQLNLE MVNFHSTLNT 60 NIVQTENSLI QEFEHEHNNN TVLSYGQSNW EEMGFNPYHQ QGHEQHQISN FPTSTLISNN 120 PPNSIANTSL GHWVGFPTTE LASTSTNLFY DPQLINMPVN ICTTQPSLFK ELFRLSPHGS 180 YGLGSSGTGS LFSHGVAEEE VTGALYHDAG SFDIKSAARK REGKDIKHHT SEKQRRVHFS 240 DKFQALRALI PNPSKNDRAT IIADAIGYIN MLKTKVNELK NEVEKKERVK RQRTEDGSCG 300 FKTVMAEAAE NNVNIRSSWL QKKSKNTEVD VRIMDDEVTV KLVQQQKRMN CLLFVSKAFD 360 EFQLDLHHVS GGLIGDHYSY LFNSKICEGC TVYASAIANK VIEVLDKELN MHQVATFN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MYAESSLSFD PTSQQDEGIE EKGLLQNDHL TTCATNFSMQ QQQQQQLNLE MVNFHSTLNT  60
NIVQTENSLI QEFEHEHNNN TVLSYGQSNW EEMGFNPYHQ QGHEQHQISN FPTSTLISNN  120
PPNSIANTSL GHWVGFPTTE LASTSTNLFY DPQLINMPVN ICTTQPSLFK ELFRLSPHGS  180
YGLGSSGTGS LFSHGVAEEE VTGALYHDAG SFDIKSAARK REGKDIKHHT SEKQRRVHFS  240
DKFQALRALI PNPSKNDRAT IIADAIGYIN MLKTKVNELK NEVEKKERVK RQRTEDGSCG  300
FKTVMAEAAE NNVNIRSSWL QKKSKNTEVD VRIMDDEVTV KLVQQQKRMN CLLFVSKAFD  360
EFQLDLHHVS GGLIGDHYSY LFNSKICEGC TVYASAIANK VIEVLDKELN MHQVATFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788151.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1U7XER5	0.0	A0A1U7XER5_NICSY; transcription factor bHLH91-like
STRING	XP_009788151.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	2e-53	bHLH family protein