PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788499.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 354aa    MW: 38548.5 Da    PI: 7.1692
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.21.8e-671252784154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklss 93 
                      ++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++     +++++k kr+ +  ++s+l +t+l+s
  XP_009788499.1 125 AGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQKERHdqlhlDHNNNKPKRQREDPSASSLVCTRLPS 219
                     5689***************************************************9998887777888744444444555567889999999999 PP

          DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++s   le+ ++P++vss+avf+c+++ss++d+e++laYq+av+igGhvfkGiL dqG+e+
  XP_009788499.1 220 NTSG--LEVGKFPAKVSSAAVFQCIQMSSIEDAEDQLAYQAAVNIGGHVFKGILCDQGPES 278
                     8765..89999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-64126277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-27128170IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.2E-24228276IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MANFFSLDGR GSSSQDQQQE ISSSHHRINN RPVPTEISSE SWFLYRNDHN QEMPTYKGFE  60
LWQNTTPQHQ PEQQQQFRHP VYPLQDLYST AVGLGVGPSQ SGFDIFGGDQ EASRSGFVMM  120
RSGGAGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLSAL  180
QQQQKERHDQ LHLDHNNNKP KRQREDPSAS SLVCTRLPSN TSGLEVGKFP AKVSSAAVFQ  240
CIQMSSIEDA EDQLAYQAAV NIGGHVFKGI LCDQGPESEY NNNMAAAGDT SSGGGSGSAG  300
VQHHHNSAAT AIIASGGAAA AAEASNFLDP SLFPAPLSTF MSAGTQFFPP PRSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203KPKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788499.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
SwissprotK4B6C91e-162EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A1U7XNI60.0A0A1U7XNI6_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X2
STRINGXP_009788493.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-71Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]