PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788508.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 424aa MW: 49092.4 Da PI: 6.1384

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.6	7.7e-24	57	164	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++ XP_009788508.1 57 KWTDNMVRLLIMVVYYIGDEVGSEVnnnnndtynskkkgggsvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 151 7************888887754223457788888999999**********************************************559 PP trihelix 74 essstcpyfdqle 86 +++++ +++ ++ XP_009788508.1 152 RVVENQNLLETMD 164 *****999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.7E-21	55	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MGHETENQQQ QQQQQSLRQG LPFNKAKNQS LTFSDDDDNN SVEDGKKSKT CPWQRMKWTD 60 NMVRLLIMVV YYIGDEVGSE VNNNNNDTYN SKKKGGGSVG VLQKKGKWKS VSRAMMERGF 120 YVSPQQCEDK FNDLNKRYKR VNDILGKGTA CRVVENQNLL ETMDHLTQKM KEEVKKLLNS 180 KHLFFREMCA YHNSCGHNNT STGGGSDIGN VQLSTEMAVE ANSQAQKRCL HSSENARIEV 240 HLEEGTKMAK GKSVDDDQED DDEDEDEDEE DDEDELSGAR GHDNHHSHEY DDDMDERSRK 300 RQRKSGSLSP MVQQLSSELA NVIQDGGRSS IEKRQWLKTR MVQLEEQHVG YLCQAFELQK 360 QRLKWEKFTS KKEREMEKEK LINERKKLEN ERMVLLLRQK ELELLDFHQH QNHNRNSDPS 420 SVTG

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MGHETENQQQ QQQQQSLRQG LPFNKAKNQS LTFSDDDDNN SVEDGKKSKT CPWQRMKWTD  60
NMVRLLIMVV YYIGDEVGSE VNNNNNDTYN SKKKGGGSVG VLQKKGKWKS VSRAMMERGF  120
YVSPQQCEDK FNDLNKRYKR VNDILGKGTA CRVVENQNLL ETMDHLTQKM KEEVKKLLNS  180
KHLFFREMCA YHNSCGHNNT STGGGSDIGN VQLSTEMAVE ANSQAQKRCL HSSENARIEV  240
HLEEGTKMAK GKSVDDDQED DDEDEDEDEE DDEDELSGAR GHDNHHSHEY DDDMDERSRK  300
RQRKSGSLSP MVQQLSSELA NVIQDGGRSS IEKRQWLKTR MVQLEEQHVG YLCQAFELQK  360
QRLKWEKFTS KKEREMEKEK LINERKKLEN ERMVLLLRQK ELELLDFHQH QNHNRNSDPS  420
SVTG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788508.1	0.0	PREDICTED: ESF1 homolog
TrEMBL	A0A1U7XCB6	0.0	A0A1U7XCB6_NICSY; ESF1 homolog
STRING	XP_009788508.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	5e-97	sequence-specific DNA binding transcription factors