PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788566.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 461aa MW: 50569.1 Da PI: 6.6677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7e-39	106	164	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_009788566.1 106 DKMLPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGSGRRKNKSS 164 7899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	102	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-32	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MSEVKLFGKT IHLPLDDLLD QRNSSAATTS HDDLITSEAE LTQIKNRDDF TNSTADEAVE 60 PETSSGISDD PKKEDADKET SSPKATKKED PSEANVTQEK ALKKLDKMLP CPRCNSMETK 120 FCYYNNYNVN QPRHFCKKCQ RYWTAGGTMR NVPVGSGRRK NKSSPTTGYR HIMVSDALQA 180 ARFEAAHGMN LPMLRTNGTV LAFGSDKPLC DPMASILNLA EKSQNSVQNG FNGSEQRTPS 240 ACGGKETGNN ISSGACSTAS NSAHDLAWKN FQAFPPQVHQ FPGHPWPYSY NAAPWTSAVP 300 QPNLAPPRFP VPFYPAPPYW GCTVASPWNV PWVSPPSSSP DCSVLSATPT SPTLGKHSRD 360 ERTLNPSNSE KEEPLQDIDG ERSVLIPKTL RVDDPYEAAK SSIWSTLGIQ NEKNDSTNGA 420 RLFKAFNSKV DDQRNHESDA SLVLQANPAA LSRSLNFQES T

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MSEVKLFGKT IHLPLDDLLD QRNSSAATTS HDDLITSEAE LTQIKNRDDF TNSTADEAVE  60
PETSSGISDD PKKEDADKET SSPKATKKED PSEANVTQEK ALKKLDKMLP CPRCNSMETK  120
FCYYNNYNVN QPRHFCKKCQ RYWTAGGTMR NVPVGSGRRK NKSSPTTGYR HIMVSDALQA  180
ARFEAAHGMN LPMLRTNGTV LAFGSDKPLC DPMASILNLA EKSQNSVQNG FNGSEQRTPS  240
ACGGKETGNN ISSGACSTAS NSAHDLAWKN FQAFPPQVHQ FPGHPWPYSY NAAPWTSAVP  300
QPNLAPPRFP VPFYPAPPYW GCTVASPWNV PWVSPPSSSP DCSVLSATPT SPTLGKHSRD  360
ERTLNPSNSE KEEPLQDIDG ERSVLIPKTL RVDDPYEAAK SSIWSTLGIQ NEKNDSTNGA  420
RLFKAFNSKV DDQRNHESDA SLVLQANPAA LSRSLNFQES T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788566.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1U7XFY6	0.0	A0A1U7XFY6_NICSY; cyclic dof factor 1-like
STRING	XP_009788566.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-81	cycling DOF factor 2