PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788628.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 136aa    MW: 16031.2 Da    PI: 9.6715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.4e-2155107456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++++eq++ Le+ F ++++++ e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_009788628.1  55 KRKLSEEQVNLLEQSFGSEHKLDSERKDKLASELGLDPRQVAVWFQNRRARWK 107
                     45899***********************************************9 PP
2HD-ZIP_I/II115.23.8e-3754135283
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                     +kr+ls+eqv+lLE+sF +e+kL++erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+   +++rLe+e
  XP_009788628.1  54 RKRKLSEEQVNLLEQSFGSEHKLDSERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKTEHDTNIVDKCRLENE 135
                     8******************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.10349109IPR001356Homeobox domain
SMARTSM003894.4E-2052113IPR001356Homeobox domain
SuperFamilySSF466898.55E-1954117IPR009057Homeodomain-like
CDDcd000862.59E-1654110No hitNo description
PfamPF000466.9E-1855107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-2256116IPR009057Homeodomain-like
PRINTSPR000314.5E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000314.5E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MIMSSSMNLQ VDDQMVLISQ YYPGIYTQEL PEQGEAKPRR RRKKSKGESS GIMRKRKLSE  60
EQVNLLEQSF GSEHKLDSER KDKLASELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKT  120
EHDTNIVDKC RLENEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13956RRRKKSKGESSGIMRKRK
24156RKKSKGESSGIMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788628.13e-96PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-58ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1U7XCN37e-95A0A1U7XCN3_NICSY; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009788628.11e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-44homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]