PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788655.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 241aa MW: 27645 Da PI: 5.4072

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.8	3.1e-07	43	97	1	54
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrt 54 +fYneYA+++GFsv k++ + +++ g +t+++ + + g+r ++++k + k +++ XP_009788655.1 43 NFYNEYARRIGFSVHKEYVNINNKLGYVTSQKAYMFQGGFRGDDRRKyQAKIHEK 97 6*****************************9999999999999888832222233 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	1.2E-9	196	241	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDNFGESKCE ATAEEVLQNN FQGSIDREPA LGLEFDDDES AFNFYNEYAR RIGFSVHKEY 60 VNINNKLGYV TSQKAYMFQG GFRGDDRRKY QAKIHEKRLE KDTKLILLLL ANLLESTILL 120 RNLNDVQTHE IDLVEDAGLF SKGTFDFMSF QAGGRANLGC TKLDHKNYLR TKRQKAMGQG 180 EADSKMIIDY EIFGDVLSFD TTYQTNKEHR PLASFVGFNN HRKMIVFGGA LMYDETSESF 240 Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788655.1	1e-179	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7XQ78	1e-178	A0A1U7XQ78_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009788655.1	1e-179	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-23	FAR1-related sequence 5