PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009788810.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 826aa MW: 92878.5 Da PI: 6.9298

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009788810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	54.2	2.8e-17	2	46	74	118
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +vg+ e +++yYah+e++ptf rrcywlL+++le+ivlvhy+e++ XP_009788810.1 2 QVGNEERIHVYYAHGEDHPTFVRRCYWLLDKSLEHIVLVHYRETQ 46 699***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	9.0E-4	1	46	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	32.457	1	51	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.2E-14	2	44	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.8E-4	270	367	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.28E-12	278	364	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.48E-16	463	579	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.9E-16	463	577	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.4E-6	464	543	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.47E-12	479	573	No hit	No description
PROSITE profile	PS50297	15.273	481	585	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	3.7E-6	514	543	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.728	514	546	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.95E-6	626	727	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	661	687	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	676	698	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.346	677	706	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.18	679	697	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.3E-4	699	721	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.889	700	724	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.0E-4	701	721	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	15	778	800	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.389	780	808	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
MQVGNEERIH VYYAHGEDHP TFVRRCYWLL DKSLEHIVLV HYRETQEAQG SPATSVAKGS 60 PATPVNSNSS SDPSDPSGWV LSEECNSVDE RTYGSSQHAH LEPNRDVTAK NHEQRLLEIN 120 TLEWDELLAP DNPNKLIATQ EAGGRASVGQ QNQIEVNGYS LNDGSLSVSR VPVASLESFV 180 CQVAGSDTVN FNPSNDMPFR SGDGQMTSNF RKNEPGVTTV GAGDSFDSLN KDGLQTQDSF 240 GRWINYFISD SPGSADEMMT PESSVTIDQS YVMQQIFNIT EISPTWALSS EETKILVIGH 300 FPGAQSQLAK SNLFCVCADV CFPAEFVQSG VYRCVISPQP PGLVSLYLSF DGNTPISQVM 360 TYEFRAPSAC KWTAPLEEQS SWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QDSLKEAKRF 420 VRKCSHITDN WAYLIKSIED RKLPVPHAKD CLFELSLQTK FHEWLLERVI GGCKTSEWDE 480 QGQGVIHLCA ILGYTWAVYP FSWSGLSLDY RDKYGWTALH WAAHYGREKM VATLLSAGAK 540 PNLVTDPTSE NPGGSTAADL ASKNGFEGLG AYLAEKALVA HFKDMTLAGN VSGSLQTTTE 600 HINPGNFTEE ELYLKDTLAA YRTAADAAAR IQAAFREHSF KVQTKAVESS NPEMEARNIV 660 AAMKIQHAFR NYESRKKLAA AARIQYRFRS WKMRKDFLNM RRHAIKIQAV FRGFQVRKQY 720 RKIVWSVGVL EKAVLRWRLK RKGFRGLQVQ SSQAVDIKPD GDVEEDFFRA SRKQAEERVE 780 RSVVRVQAMF RSKRAQEEYR RMKLEHDNAT LEYERASLLN PDIQIG

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

MQVGNEERIH VYYAHGEDHP TFVRRCYWLL DKSLEHIVLV HYRETQEAQG SPATSVAKGS  60
PATPVNSNSS SDPSDPSGWV LSEECNSVDE RTYGSSQHAH LEPNRDVTAK NHEQRLLEIN  120
TLEWDELLAP DNPNKLIATQ EAGGRASVGQ QNQIEVNGYS LNDGSLSVSR VPVASLESFV  180
CQVAGSDTVN FNPSNDMPFR SGDGQMTSNF RKNEPGVTTV GAGDSFDSLN KDGLQTQDSF  240
GRWINYFISD SPGSADEMMT PESSVTIDQS YVMQQIFNIT EISPTWALSS EETKILVIGH  300
FPGAQSQLAK SNLFCVCADV CFPAEFVQSG VYRCVISPQP PGLVSLYLSF DGNTPISQVM  360
TYEFRAPSAC KWTAPLEEQS SWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QDSLKEAKRF  420
VRKCSHITDN WAYLIKSIED RKLPVPHAKD CLFELSLQTK FHEWLLERVI GGCKTSEWDE  480
QGQGVIHLCA ILGYTWAVYP FSWSGLSLDY RDKYGWTALH WAAHYGREKM VATLLSAGAK  540
PNLVTDPTSE NPGGSTAADL ASKNGFEGLG AYLAEKALVA HFKDMTLAGN VSGSLQTTTE  600
HINPGNFTEE ELYLKDTLAA YRTAADAAAR IQAAFREHSF KVQTKAVESS NPEMEARNIV  660
AAMKIQHAFR NYESRKKLAA AARIQYRFRS WKMRKDFLNM RRHAIKIQAV FRGFQVRKQY  720
RKIVWSVGVL EKAVLRWRLK RKGFRGLQVQ SSQAVDIKPD GDVEEDFFRA SRKQAEERVE  780
RSVVRVQAMF RSKRAQEEYR RMKLEHDNAT LEYERASLLN PDIQIG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566049	0.0	JN566049.1 Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788810.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U7XQQ2	0.0	A0A1U7XQQ2_NICSY; calmodulin-binding transcription activator 5 isoform X2
STRING	XP_009788809.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]