PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788923.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 196aa    MW: 22213.5 Da    PI: 8.4908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-1016581155
                    HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +RR+++ + ++ Lr+llP  +    ++K s ++   +Av+YIk+Lq
  XP_009788923.1 16 QRRQEMTTLYSSLRSLLPLqC---VKGKRSVSDHMHEAVNYIKQLQ 58
                    7******************88...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.381557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-71658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.61E-91673IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-51659No hitNo description
Gene3DG3DSA:4.10.280.103.2E-71673IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSSLKKLCI EIWNVQRRQE MTTLYSSLRS LLPLQCVKGK RSVSDHMHEA VNYIKQLQAN  60
MNELERKREK LKMVPNSSPH GRLDIISSII VSSDCVTVSP CNGGVEILIN GNYRRESLPL  120
SRILQELLKE GFDVSAKVNQ NSLHRIQSEA CDEKCINLHS LQRKVIDAIN IDVQLDAKSE  180
FEVYGFGICN RTHSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788923.11e-142PREDICTED: transcription factor bHLH36-like
TrEMBLA0A1U7XDH31e-141A0A1U7XDH3_NICSY; transcription factor bHLH36-like
STRINGXP_009788923.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.19e-28bHLH family protein