PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009789878.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 254aa MW: 26943.2 Da PI: 10.3876

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009789878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.4	5.1e-38	34	131	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa. 95 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ss+ ++ sa+ XP_009789878.1 34 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRSSSSSILTSSISAPl 127 689******************************************************************888.2333333332333322222221 PP TCP 96 kskk 99 +k+ XP_009789878.1 128 DHKQ 131 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	40	94	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-34	41	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALTVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTI PASFSTVSVS VRSSSSSILT 120 SSISAPLDHK QPPSSQPLIS PAPFILGKRL RPDDESIENG NKDDVGPTSG FWAVPARPDF 180 GQVWSFAAAP PEMMAPTSAA LSLQSSRFFQ QQMGEASAAR VGNYLPMTQG HLNLLASLSG 240 PPQPSSGRRD DDGR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009789878.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-87	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U7XG74	0.0	A0A1U7XG74_NICSY; transcription factor TCP7-like
STRING	XP_009789878.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-79	TCP family protein