PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790153.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 183aa    MW: 20890.5 Da    PI: 8.4653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-193585155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+ +l+g
  XP_009790153.1 35 PVYRGVRRRR-WGKWVSEIREPRK---KSRIWLGSFSSPEMAARAYDVAAYCLKG 85
                    68*****777.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.54E-6717No hitNo description
PfamPF008474.1E-133585IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223695IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-313694IPR001471AP2/ERF domain
SMARTSM003801.2E-343699IPR001471AP2/ERF domain
PROSITE profilePS5103223.3143693IPR001471AP2/ERF domain
CDDcd000182.26E-303794No hitNo description
PRINTSPR003671.3E-93748IPR001471AP2/ERF domain
PRINTSPR003671.3E-95975IPR001471AP2/ERF domain
SuperFamilySSF1014476.54E-6122150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEKRQPPPPP PPPPSPPVNC RKIDIESGGS STRHPVYRGV RRRRWGKWVS EIREPRKKSR  60
IWLGSFSSPE MAARAYDVAA YCLKGCKTQL NFPDEIERLP RPITSTARDI QAAAAMAANN  120
AIIVKKKNQE NCGSDDFWEE IELPELKDGN DYNLYSEVWQ WSFCNYGRFS SDNNTFINDD  180
GVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-192395174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790153.11e-134PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI27e-52ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1U7XH031e-133A0A1U7XH03_NICSY; ethylene-responsive transcription factor ERF023-like
STRINGXP_009790153.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]