PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790212.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 388aa MW: 44533.8 Da PI: 4.9103

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.9	2.3e-31	80	172	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+ye+l d +++ lisw+ ng+sf+++d ++fa kvLp++F+h+n++SFv QLn YgF+k++ ++ eF+h+ F++gk + l++ XP_009790212.1 80 FVLKIYEMLADIQFNPLISWNGNGTSFIIHDCHKFAAKVLPRFFRHNNISSFVCQLNCYGFRKISWDK---------FEFQHECFQRGKGQWLKN 165 9***************************************************************99.........67************ PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikrk s+ XP_009790212.1 166 IKRKGSK 172 *9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.2E-38	76	169	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.66E-29	77	169	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	8.5E-31	77	169	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-27	80	169	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-13	80	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-13	118	130	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-13	131	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MKSDKGKGKM TNNIGELLEE WYEDEGLEDV QIDISMLEND DYQGDNTNNE GIHGSATGAH 60 QHGFGVRNSR RNLQKRACPF VLKIYEMLAD IQFNPLISWN GNGTSFIIHD CHKFAAKVLP 120 RFFRHNNISS FVCQLNCYGF RKISWDKFEF QHECFQRGKG QWLKNIKRKG SKKSEMNQQP 180 QEQGIDETVA VTMEKEIEEI REEQNAMREE IIMLHQQLDI LEKEMEDNTK QARNHVSSKK 240 AKILKYLLGP LFECIGEVGS SEVAQGLQEE EKQGDDIEDG VENRGQKRKK QVEEELQGKN 300 EGSKKIAAAG VSDFRSDSDL RKMLMDEMDM NNLAQEQPDN FLESEEQAEG PSFWIDYVEK 360 LDHKPILSGV GPAVSQSQEN HISKLFHD

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MKSDKGKGKM TNNIGELLEE WYEDEGLEDV QIDISMLEND DYQGDNTNNE GIHGSATGAH  60
QHGFGVRNSR RNLQKRACPF VLKIYEMLAD IQFNPLISWN GNGTSFIIHD CHKFAAKVLP  120
RFFRHNNISS FVCQLNCYGF RKISWDKFEF QHECFQRGKG QWLKNIKRKG SKKSEMNQQP  180
QEQGIDETVA VTMEKEIEEI REEQNAMREE IIMLHQQLDI LEKEMEDNTK QARNHVSSKK  240
AKILKYLLGP LFECIGEVGS SEVAQGLQEE EKQGDDIEDG VENRGQKRKK QVEEELQGKN  300
EGSKKIAAAG VSDFRSDSDL RKMLMDEMDM NNLAQEQPDN FLESEEQAEG PSFWIDYVEK  360
LDHKPILSGV GPAVSQSQEN HISKLFHD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	3e-22	80	169	10	110	Heat shock factor protein 1
5hdn_A	3e-22	80	169	10	110	Heat shock factor protein 1
5hdn_B	3e-22	80	169	10	110	Heat shock factor protein 1
5hdn_C	3e-22	80	169	10	110	Heat shock factor protein 1
5hdn_D	3e-22	80	169	10	110	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790212.1	0.0	PREDICTED: heat stress transcription factor A-7b-like
TrEMBL	A0A1U7XDS2	0.0	A0A1U7XDS2_NICSY; heat stress transcription factor A-7b-like
STRING	XP_009790212.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14099	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	1e-28	heat shock transcription factor A3