PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790268.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18427 Da    PI: 7.5076
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ s r+ tfskRrng++KKA+ LS+LCd++vavi+fss+g+l+e+ss
  XP_009790268.1  9 KRIEDRSSRHATFSKRRNGLMKKAKQLSILCDVDVAVIVFSSRGRLFEFSS 59
                    79***********************************************96 PP
2K-box257.9e-1080140969
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                     ++++ + + + ++a      e Lq+  ++l   d+++Ls+ +L +Le+q e++l++ R +K
  XP_009790268.1  80 VSAEVNDTEESKYASFMTMEEVLQTVEKQLEEPDVDDLSITDLVHLENQFETALTQTRFRK 140
                     445555666778889999999*************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-29277IPR002100Transcription factor, MADS-box
CDDcd002653.40E-33271No hitNo description
PRINTSPR004043.5E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGRKKVEIKR IEDRSSRHAT FSKRRNGLMK KAKQLSILCD VDVAVIVFSS RGRLFEFSST  60
NSLTGITQRY HRNVKAEDKV SAEVNDTEES KYASFMTMEE VLQTVEKQLE EPDVDDLSIT  120
DLVHLENQFE TALTQTRFRK VGSSTFLCAS YSCLDLLHLL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19161161Myocyte-specific enhancer factor 2B
1tqe_Q3e-19161161Myocyte-specific enhancer factor 2B
1tqe_R3e-19161161Myocyte-specific enhancer factor 2B
1tqe_S3e-19161161Myocyte-specific enhancer factor 2B
6c9l_A3e-19161161Myocyte-specific enhancer factor 2B
6c9l_B3e-19161161Myocyte-specific enhancer factor 2B
6c9l_C3e-19161161Myocyte-specific enhancer factor 2B
6c9l_D3e-19161161Myocyte-specific enhancer factor 2B
6c9l_E3e-19161161Myocyte-specific enhancer factor 2B
6c9l_F3e-19161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755174e-47HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790268.11e-115PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A1U7XHB61e-114A0A1U7XHB6_NICSY; agamous-like MADS-box protein AGL27
STRINGXP_009790268.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.11e-39AGAMOUS-like 31