PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790364.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 207aa MW: 23447.7 Da PI: 8.7157

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.9	3.8e-34	11	105	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++r+kCa+ C+lapyfpae++++f++vhk+FG+snv kl+k+l ee+r++a++slv+eA +r+++Pv G++g ++++ ++l+ k++ + XP_009790364.1 11 ACASCKHQRKKCANTCILAPYFPAEKSREFQAVHKIFGVSNVAKLIKTLIEEDRKKAADSLVWEAFCRQKNPVLGSYGEYRRVVEELKLYKSQYQ 105 7***********************************************************************************99999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.537	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-32	11	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MQKINGRDTA ACASCKHQRK KCANTCILAP YFPAEKSREF QAVHKIFGVS NVAKLIKTLI 60 EEDRKKAADS LVWEAFCRQK NPVLGSYGEY RRVVEELKLY KSQYQQILQI PTQGATHDMM 120 YNAAQGLNNG YNKKANSMME SWLCSNNIHL QHVQNNMEKL TSDCNGSTII VPQQAIDGFT 180 NHYYLTAGNC NPIDVKRMEN SSWEASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	10	88	10	88	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	10	88	10	88	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790364.1	1e-157	PREDICTED: LOB domain-containing protein 27-like
Refseq	XP_016466095.1	1e-157	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A1S3ZNI0	1e-156	A0A1S3ZNI0_TOBAC; LOB domain-containing protein 27-like
TrEMBL	A0A1U7XTY2	1e-156	A0A1U7XTY2_NICSY; LOB domain-containing protein 27-like
STRING	XP_009790364.1	1e-156	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	4e-50	LOB domain-containing protein 2