PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790451.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 360aa MW: 40420.7 Da PI: 6.5254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	215	255	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+++ ++ L +llP++ kK++ a++L +A +Y+k Lq XP_009790451.1 215 RIRRQKLSEKTRSLEKLLPWD-----KKMDTATMLGEAYKYVKFLQ 255 89****************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.776	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-5	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-10	213	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.24E-6	215	259	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-8	215	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSLS 60 YFHPSLANDI PYAAAASQMQ QSSATFDFST TRDFPWVKET ENILDADQKL KLPKLEPVTE 120 NLQLYPYNNE IFLNEPPFNY FSNGISDDSG LGYGRLPDLR CLEMPNYLDF HLGDSSSTVN 180 GVEPVSVNSQ VLMSNQLSTM PKSCKQSAYG SSTTRIRRQK LSEKTRSLEK LLPWDKKMDT 240 ATMLGEAYKY VKFLQAQVRV LQSMPVLVEG GASSSSSGSE DRNGKFSNVN EVKANSFYGP 300 LARLNRQQLL QVVLNSPVAQ TYLYSKGCCV YSAEQLLQLR KIAQRNALYR QTLFYSGMFS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSLS  60
YFHPSLANDI PYAAAASQMQ QSSATFDFST TRDFPWVKET ENILDADQKL KLPKLEPVTE  120
NLQLYPYNNE IFLNEPPFNY FSNGISDDSG LGYGRLPDLR CLEMPNYLDF HLGDSSSTVN  180
GVEPVSVNSQ VLMSNQLSTM PKSCKQSAYG SSTTRIRRQK LSEKTRSLEK LLPWDKKMDT  240
ATMLGEAYKY VKFLQAQVRV LQSMPVLVEG GASSSSSGSE DRNGKFSNVN EVKANSFYGP  300
LARLNRQQLL QVVLNSPVAQ TYLYSKGCCV YSAEQLLQLR KIAQRNALYR QTLFYSGMFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790451.1	0.0	PREDICTED: transcription factor bHLH117
TrEMBL	A0A1U7XLG3	0.0	A0A1U7XLG3_NICSY; transcription factor bHLH117
STRING	XP_009790451.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	1e-17	bHLH family protein