PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790621.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 481aa MW: 53652.6 Da PI: 8.2059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.6e-08	388	428	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++++P K++ a++L +A +Y+k L XP_009790621.1 388 ARQRREKISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 428 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.926	379	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-14	385	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-10	385	433	No hit	No description
SMART	SM00353	3.4E-13	385	434	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	387	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	388	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MQFLYKHVFH LTYCKLNCSL RVRTNSFHNK LVTKVSMDTL DCDATPIIRS ASSSWKNQQQ 60 QMIKDSLMMC SFAPVSSKAN VFTPIQQQCH DFGDSNAPSA MVLQEFGAAF DPIHVLSSWN 120 IPQRQEAATK LAADSVAGKS RTGPSRDCTK IGPSSFRPQN NVVPNLGDSL SAVCGLMPDN 180 LDCNGPITKS RSLDCLLSAT NTSNYTDTSV EDDEISMIFS DDSKRLWNTN TDNFAVSSGE 240 SAIDAFILKP IDANDSNNIE CPVNETDQHN NPIRSSEAKR HMTKRRRYNR ALLQPDLSTK 300 DSGFKLISED KPKSKKLRSE NTNINFQQSS SSASSADDEP DSEAITQMKE MIYCAAAFRP 360 MSFGTEVEAE KPKRKNVRIS SDPQTVAARQ RREKISEKIK ILQKMVPGGS KMDTASMLDE 420 AANYLKFLRS QIQAMEAFGH KIDPLIMTNI RSLSSIPFNY PFPMQPHFPI QLANPVQRPY 480 S

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MQFLYKHVFH LTYCKLNCSL RVRTNSFHNK LVTKVSMDTL DCDATPIIRS ASSSWKNQQQ  60
QMIKDSLMMC SFAPVSSKAN VFTPIQQQCH DFGDSNAPSA MVLQEFGAAF DPIHVLSSWN  120
IPQRQEAATK LAADSVAGKS RTGPSRDCTK IGPSSFRPQN NVVPNLGDSL SAVCGLMPDN  180
LDCNGPITKS RSLDCLLSAT NTSNYTDTSV EDDEISMIFS DDSKRLWNTN TDNFAVSSGE  240
SAIDAFILKP IDANDSNNIE CPVNETDQHN NPIRSSEAKR HMTKRRRYNR ALLQPDLSTK  300
DSGFKLISED KPKSKKLRSE NTNINFQQSS SSASSADDEP DSEAITQMKE MIYCAAAFRP  360
MSFGTEVEAE KPKRKNVRIS SDPQTVAARQ RREKISEKIK ILQKMVPGGS KMDTASMLDE  420
AANYLKFLRS QIQAMEAFGH KIDPLIMTNI RSLSSIPFNY PFPMQPHFPI QLANPVQRPY  480
S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790621.1	0.0	PREDICTED: transcription factor bHLH87-like
TrEMBL	A0A1U7XLX8	0.0	A0A1U7XLX8_NICSY; transcription factor bHLH87-like
STRING	XP_009790621.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-61	bHLH family protein