PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790705.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 194aa MW: 21692.5 Da PI: 7.966

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	54.1	6.5e-17	113	156	2	45
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45 g+kdrh k+ T++g+RdRRv ls+++a++f+dLqd+L s XP_009790705.1 113 SGGKDRHNKVWTSKGLRDRRVSLSVNTAIQFYDLQDRLDTQHIS 156 689***********************************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-15	114	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	12.073	115	173	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MLLVCWWYNT GPCAFCGRIP NGLMEDTDKS QSVRTILGSD GKVWNNMSEN IDEKVKFVFL 60 LERENLLLNS VLIKFESQDE NEAVKGSHGL GGGGIGRLCG WPSNLIVRVS RASGGKDRHN 120 KVWTSKGLRD RRVSLSVNTA IQFYDLQDRL DTQHISEDKR SSAGTDEIDG DPNYQQQQQH 180 VSLSKKKAAL VIIV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790705.1	1e-142	PREDICTED: uncharacterized protein LOC104238123
TrEMBL	A0A1U7XW30	1e-141	A0A1U7XW30_NICSY; uncharacterized protein LOC104238123
STRING	XP_009790705.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2464	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-21	TCP family protein