PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790887.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 175aa MW: 19753.5 Da PI: 8.6205

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.9	4e-13	4	31	19	46
RWP-RK 19 kdAAkeLgvclTvLKriCRqyGIkRWPh 46 +AA +Lgv+ ++LKriCR yGI RWP XP_009790887.1 4 DAAADDLGVGKSTLKRICRLYGITRWPP 31 5799***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.979	1	64	IPR003035	RWP-RK domain
Pfam	PF02042	5.0E-11	2	32	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-16	90	173	No hit	No description
PROSITE profile	PS51745	19.089	92	174	IPR000270	PB1 domain
SMART	SM00666	1.2E-13	92	174	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.0E-15	93	169	No hit	No description
Pfam	PF00564	5.1E-15	96	173	IPR000270	PB1 domain
CDD	cd05992	6.23E-14	96	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MTQDAAADDL GVGKSTLKRI CRLYGITRWP PKNKEKKRKC SHSRKMKSIL PAEEDVNAST 60 KFQQSSDSPN KEDTINGTKV GAHVTEIRDG TVVITKVKYG DRVLRLQLTL SSKMKDLEEE 120 VAKRVESSIE SFDFTYVDKE GDTILIKCDE DLTECFLHFR SSESATVKMF ITPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	38	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790887.1	1e-127	PREDICTED: protein NLP3-like
TrEMBL	A0A1U7XFN9	1e-126	A0A1U7XFN9_NICSY; protein NLP3-like
STRING	XP_009790887.1	1e-126	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-14	NIN like protein 7