PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791338.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 313aa    MW: 34401.3 Da    PI: 6.2787
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.63e-2736134186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     rWt+qe+l+Li+++r  e+r+rrg+             + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++es+s +++ 
  XP_009791338.1  36 RWTRQEILVLIQGKRVAESRVRRGRtaglelgsgsgsgQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIKEWECGIKEESESFWVMR 130
                     8**********************977888899999999**********************************************9999999*999 PP

        trihelix  83 dqle 86 
                     ++l+
  XP_009791338.1 131 NDLR 134
                     9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-1136129No hitNo description
PROSITE profilePS500906.21436106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.0E-536105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALEPMTLAF DGDSNGGRQQ SVNGADDGNR APRLPRWTRQ EILVLIQGKR VAESRVRRGR  60
TAGLELGSGS GSGQVEPKWA SVSSYCKKHG VNRGPVQCRK RWSNLAGDFK KIKEWECGIK  120
EESESFWVMR NDLRRDRKLP GFFDKEVYEI LDRGSGGEEM EAGLALALAP AAAVNEPEAL  180
FDSGRSAAAD EGLFSDFEQS EAGDKDKHMP IPAPTPISGI NHQKEPTSNP DGGSAQEGKK  240
RKRGVTDTDE EADNLQHQLA KALERNGNLL SSQLEAQNAH YQLDREQRKD HVNSLIAVLD  300
KLADAMGRIA DKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243GKKRKRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791338.10.0PREDICTED: uncharacterized protein LOC104238623 isoform X2
SwissprotQ8VZ201e-107ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1U7XKC10.0A0A1U7XKC1_NICSY; uncharacterized protein LOC104238623 isoform X2
STRINGXP_009791337.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-103Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]