PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791594.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 204aa    MW: 23096.6 Da    PI: 5.3347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-053052123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ Fs+   L  H++ H
  XP_009791594.1 30 YRCSFCKRGFSNAQALGGHMNIH 52
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-62856No hitNo description
Gene3DG3DSA:3.30.160.602.3E-42854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4683057IPR007087Zinc finger, C2H2
SMARTSM003550.00533052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MESDLNSSNF DKYQITWKSD ELGLSQVKFY RCSFCKRGFS NAQALGGHMN IHRKDRAKLR  60
EIPSETLDIK KSVSPSPDTV APYDDESVQK KVSSDDTSSP SKRPCVTPEE EHDDHHRYHQ  120
HHISKTKDGN HDYPISKAKD IDNHELIIGG DLLQLPLFVD FPSKEVINCV ETQEGNKGMQ  180
LSDDSELDLE LRLGPEPPES SMKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-44HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791594.11e-150PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1U7XX911e-149A0A1U7XX91_NICSY; transcriptional regulator TAC1-like
STRINGXP_009791594.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-18C2H2 family protein